/* ------------------------------------------------------------------
   lmgb.css — visual identity for lmgb.xyz
   Loaded after css/styles.css (Start Bootstrap Resume) and overrides it.
   Palette: DarkCyan (#008B8B), a darker cyan for text, and a single amber accent.
   Motif: a phage plaque assay (bacterial lawn with clear plaques) in the sidebar.
------------------------------------------------------------------- */

:root {
    --cyan: #008b8b;          /* DarkCyan: sidebar, section headings, dots */
    --cyan-deep: #006262;     /* darker DarkCyan for small text and links (AA contrast on white) */
    --cyan-ink: #0b3f3f;      /* name and headings on light */
    --amber: #f2b84b;         /* single accent: active menu ring, focus inside the sidebar */
    --paper: #fafcfc;         /* page background, slightly cool */
    --lawn: #d9eaea;          /* rules, image frames */
    --ink: #172626;           /* body text */
    --muted: #4c6262;         /* dates, secondary text */

    --font-head: "Familjen Grotesk", "Helvetica Neue", Arial, sans-serif;
    --font-body: "Newsreader", Georgia, "Times New Roman", serif;

    --bs-primary: var(--cyan);
    --bs-primary-rgb: 0, 139, 139;
}

/* ---------- Base ---------- */
body {
    font-family: var(--font-body);
    font-size: 1.125rem;
    line-height: 1.6;
    color: var(--ink);
    background: var(--paper);
    -webkit-font-smoothing: antialiased;
}

p, li { color: var(--ink); }

a { color: var(--cyan-deep); text-underline-offset: 0.18em; text-decoration-thickness: 1px; }
a:hover { color: var(--cyan-ink); text-decoration-color: var(--cyan); }

a:focus-visible, button:focus-visible {
    outline: 2px solid var(--cyan-deep);
    outline-offset: 3px;
    border-radius: 2px;
}

h1, h2, h3, h4, h5, h6,
.subheading, .navbar, .text-primary {
    font-family: var(--font-head);
    text-transform: none;
    letter-spacing: normal;
}

.text-primary { color: var(--muted) !important; }
.bg-primary { background-color: var(--cyan) !important; }

/* ---------- Sidebar: the plaque assay ---------- */
#sideNav {
    background-color: var(--cyan) !important;
}
#sideNav a:focus-visible { outline-color: var(--amber); }

@media (min-width: 992px) {
    #sideNav {
        width: 17rem;
        align-items: flex-start;
        padding: 2.5rem 2rem;
        background-image: url("../assets/img/plaque-lawn.svg");
        background-repeat: no-repeat;
        background-position: center bottom;
        background-size: 100% auto;
    }
    body { padding-top: 0; padding-left: 17rem; }

    #sideNav .navbar-brand { align-self: flex-start; margin: 0 0 1.75rem 0 !important; padding: 0; }
    #sideNav .navbar-brand .img-profile { margin-right: 0 !important; }
    #sideNav .navbar-brand .img-profile {
        max-width: 8.5rem;
        max-height: 8.5rem;
        border: 3px solid rgba(255, 255, 255, 0.4);
        margin-left: 0 !important;
        display: block;
    }

    #sideNav .navbar-collapse { align-items: flex-start; width: 100%; }
    #sideNav .navbar-nav { text-align: left; width: 100%; }
}

#sideNav .navbar-nav .nav-item .nav-link {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: 1.1rem;
    text-transform: none;
    letter-spacing: 0.005em;
    color: #fff;
    padding: 0.32rem 0 0.32rem 1.25rem;
    position: relative;
}

/* Active item is marked by a small "plaque": a hollow ring */
#sideNav .navbar-nav .nav-item .nav-link::before {
    content: "";
    position: absolute;
    left: 0;
    top: 50%;
    width: 0.55rem;
    height: 0.55rem;
    margin-top: -0.275rem;
    border-radius: 50%;
    border: 1.5px solid transparent;
}
#sideNav .navbar-nav .nav-item .nav-link:hover { color: #fff; text-decoration: underline; text-underline-offset: 0.25em; text-decoration-color: var(--amber); }
#sideNav .navbar-nav .nav-item .nav-link.active { color: #fff; }
#sideNav .navbar-nav .nav-item .nav-link.active::before { border-color: var(--amber); background: rgba(242, 184, 75, 0.3); }

@media (max-width: 991.98px) {
    #sideNav .navbar-brand span { font-family: var(--font-head); font-weight: 600; letter-spacing: 0; }
    #sideNav .navbar-nav .nav-item .nav-link { padding-left: 1.25rem; }
}

/* ---------- Sections ---------- */
section.resume-section {
    min-height: auto;
    display: block;
    padding: 5.5rem 3.5rem 4.5rem;
    max-width: 58rem;
}
section.resume-section .resume-section-content { width: 100%; }

#about { padding-top: 7rem; padding-bottom: 5rem; }

hr.m-0 { border: 0; border-top: 1px solid var(--lawn); opacity: 1; margin-left: 3.5rem !important; max-width: 51rem; }

/* Name: one line, set in the grotesk, no colored half */
section.resume-section h1 {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: clamp(2.5rem, 4.6vw, 4rem);
    line-height: 1.02;
    letter-spacing: -0.025em;
    color: var(--cyan-ink);
    margin-bottom: 0.5rem !important;
}
section.resume-section h1 span.text-primary { color: inherit !important; font: inherit; letter-spacing: inherit; white-space: normal; }

#about .subheading { font-size: 1.05rem; font-weight: 400; margin-bottom: 2.25rem !important; }
#about .subheading a { color: var(--muted); }
#about .subheading a:hover { color: var(--cyan-deep); }

#about .lead {
    font-family: var(--font-body);
    font-size: 1.4rem;
    line-height: 1.5;
    font-weight: 400;
    max-width: 34em;
    color: var(--ink);
    margin-bottom: 1.75rem !important;
}
#about p { max-width: 40em; }
#about p.lead + p, #about p.lead ~ p { margin-bottom: 1.25rem !important; font-size: 1.1rem; }

section.resume-section h2 {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: 2.1rem;
    letter-spacing: -0.015em;
    color: var(--cyan);
    margin-bottom: 2.25rem !important;
}

section.resume-section h3 {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: 1.3rem;
    color: var(--ink);
    letter-spacing: -0.005em;
}

section.resume-section .subheading {
    font-family: var(--font-head);
    font-weight: 500;
    font-size: 1.05rem;
    color: var(--muted);
}
section.resume-section .subheading a { color: inherit; }

/* Dates sit to the right, quiet, with even figures */
section.resume-section .flex-shrink-0 .text-primary,
section.resume-section span.text-primary {
    font-family: var(--font-head);
    font-size: 0.95rem;
    font-weight: 500;
    font-variant-numeric: tabular-nums;
    color: var(--muted) !important;
    white-space: nowrap;
}

/* Experience entries: tighter rhythm, readable measure */
#experience .d-flex { margin-bottom: 2.75rem !important; }
#experience p, #experience li, #apps li, #teaching li, #skills li, #education p { max-width: 42em; }
#experience ul { padding-left: 1.1rem; }
#experience li { margin-bottom: 0.35rem; }
#experience li::marker { color: var(--cyan); }

/* Check-mark lists → small DarkCyan dots */
.fa-ul { margin-left: 1.4rem; }
.fa-ul > li { margin-bottom: 0.3rem; }
.fa-li { color: var(--cyan); font-size: 0.55em; top: 0.55em; }
.fa-li svg, .fa-li i { opacity: 0; }
.fa-li::after {
    content: "";
    position: absolute;
    left: 0.6em;
    top: 0.35em;
    width: 0.62rem;
    height: 0.62rem;
    border-radius: 50%;
    background: var(--cyan);
    opacity: 0.9;
}

.dev-icons { font-size: 2.4rem; }
.dev-icons .list-inline-item i, .dev-icons .list-inline-item svg { color: var(--cyan); }
.dev-icons .list-inline-item:hover i, .dev-icons .list-inline-item:hover svg { color: var(--cyan-deep); }

.social-icons .social-icon {
    background-color: var(--cyan);
    height: 3rem;
    width: 3rem;
    font-size: 1.25rem;
}
.social-icons .social-icon:hover { background-color: var(--cyan-deep); }

/* ---------- Publications: a chronological list, years in the margin ---------- */
#research_portfolio .research-portfolio-gallery {
    height: auto;
    overflow: visible;
    border: 0;
    padding: 0;
    background: none;
    box-shadow: none;
}
#research_portfolio .research-content { display: block; padding: 0; }

#research_portfolio .research-item-gallery {
    display: grid;
    grid-template-columns: 4.25rem 1fr;
    column-gap: 1.25rem;
    border-top: 1px solid var(--lawn);
    padding: 1.6rem 0;
}
#research_portfolio .research-item-gallery:last-child { border-bottom: 1px solid var(--lawn); }

#research_portfolio .pub-year {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: 1.05rem;
    font-variant-numeric: tabular-nums;
    color: var(--cyan-deep);
    padding-top: 0.15rem;
}
#research_portfolio .pub-year.repeat { color: transparent; }   /* kept for screen readers, hidden visually */
#research_portfolio .pub-year.project { font-size: 0.9rem; font-weight: 500; color: var(--muted); }

#research_portfolio .research-item {
    display: grid;
    grid-template-columns: 1fr 11.5rem;
    grid-template-areas: "title figure" "notes figure";
    column-gap: 1.75rem;
    align-items: start;
    background: none;
    border: 0;
    padding: 0;
}
#research_portfolio .research-item h4 {
    grid-area: title;
    font-family: var(--font-body);
    font-weight: 500;
    font-size: 1.22rem;
    line-height: 1.35;
    margin: 0 0 0.5rem;
    max-width: 34em;
}
#research_portfolio .research-item h4 a { color: var(--ink); text-decoration: none; }
#research_portfolio .research-item h4 a:hover { color: var(--cyan-deep); text-decoration: underline; text-decoration-color: var(--cyan); }

#research_portfolio .research-item ul { grid-area: notes; list-style: none; padding: 0; margin: 0; }
#research_portfolio .research-item li { font-size: 1rem; line-height: 1.5; color: var(--muted); margin: 0; max-width: 38em; }

#research_portfolio .research-image-container {
    grid-area: figure;
    width: 11.5rem;
    height: 8rem;
    background: #fff;
    border: 1px solid var(--lawn);
    border-radius: 4px;
    display: flex;
    align-items: center;
    justify-content: center;
    gap: 0.25rem;
    padding: 0.35rem;
    overflow: hidden;
}
#research_portfolio .research-image-container img {
    max-width: 100%;
    max-height: 100%;
    width: auto;
    height: auto;
    object-fit: contain;
}
#research_portfolio .research-image-container.multi-image img { max-height: 100%; max-width: 48%; }

#research_portfolio .research-item:hover { transform: none; box-shadow: none; }
#research_portfolio .research-image-container:hover img { transform: none; }
#research_portfolio .research-item h4, #research_portfolio .research-item h4 a { text-transform: none; }

/* The theme forces a horizontal card carousel with !important; undo only those properties */
#research_portfolio .research-portfolio-gallery { height: auto !important; overflow: visible !important; }
#research_portfolio .research-content { display: block !important; width: auto !important; height: auto !important; }
#research_portfolio .research-item-gallery { min-width: 0 !important; max-width: none !important; }
#research_portfolio .research-item { height: auto !important; box-shadow: none; border-radius: 0; transition: none; }
#research_portfolio .research-image-container { height: 8rem !important; }
@media (max-width: 640px) {
    #research_portfolio .research-image-container { height: 10rem !important; }
}

/* ---------- Applications and pipelines ---------- */
#apps .flex-grow-1 > a {
    font-family: var(--font-head);
    font-weight: 600;
    font-size: 1.3rem;
    color: var(--cyan-ink);
    text-decoration: none;
}
#apps .flex-grow-1 > a:hover { color: var(--cyan-deep); text-decoration: underline; text-decoration-color: var(--cyan); }
#apps .flex-grow-1 > br { display: none; }
#apps .flex-grow-1 > ul { margin-top: 0.6rem; padding-left: 1.1rem; }
#apps li::marker { color: var(--cyan); }
#apps .d-flex { margin-bottom: 2.25rem !important; }

/* ---------- Awards, interests, education ---------- */
#awards .fa-ul li, #interests p { max-width: 42em; }
#education .d-flex { margin-bottom: 2.25rem !important; }

/* ---------- Small screens ---------- */
@media (max-width: 991.98px) {
    section.resume-section { padding: 3.5rem 1.25rem 3rem; }
    #about { padding-top: 4rem; }
    hr.m-0 { margin-left: 1.25rem !important; margin-right: 1.25rem !important; }
    #about .lead { font-size: 1.22rem; }
}

@media (max-width: 640px) {
    body { font-size: 1.05rem; }
    #research_portfolio .research-item-gallery { grid-template-columns: 1fr; row-gap: 0.35rem; }
    #research_portfolio .pub-year.repeat { display: none; }
    #research_portfolio .research-item { grid-template-columns: 1fr; grid-template-areas: "title" "notes" "figure"; }
    #research_portfolio .research-image-container { width: 100%; height: 10rem; margin-top: 0.85rem; }
    section.resume-section .d-flex.flex-md-row .flex-shrink-0 { margin-top: 0.25rem; }
}

@media (prefers-reduced-motion: reduce) {
    html { scroll-behavior: auto; }
}